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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93197942_93199553_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93197942 - 93199553
Intron Length:
1612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGATTCTAAAAT
Flanking Amino Acid:
VCVRKCFTLIGMIGPAVFLV
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77
0.61
1
78.5
33.7
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
57.8
0.32
1.8
74.63
41.7

Associated Gene:

Gene:
SLC17A5
Ensembl Gene ID:
ENSAPLG00000008535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008916
93191239 - 93212233
20995