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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93202341_93203176_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93202341 - 93203176
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCAC
5'SS Class:
major
3'SS Sequence:
TCCTGCTTGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTTCTTTTTT
Flanking Amino Acid:
EYILSSLKDQLSTQKSVPWR
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
57.5
41.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
67.2
0.39
1
61.3
40.1
Minor 5ss
29.3
-2.4
3.5
41
45.6
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
SLC17A5
Ensembl Gene ID:
ENSAPLG00000008535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008916
93191239 - 93212233
20995