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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93204613_93207074_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93204613 - 93207074
Intron Length:
2462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTGGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
AGATGATGATTT
Flanking Amino Acid:
RSKLLSISYAGAQLGTVVSL
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
82.4
0.73
0.9
81.6
30.5
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
39.4
-0.7
2.1
54.4
40.9

Associated Gene:

Gene:
SLC17A5
Ensembl Gene ID:
ENSAPLG00000008535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008916
93191239 - 93212233
20995