About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93207903_93209128_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93207903 - 93209128
Intron Length:
1226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGTCT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TTGAACTGACTG
Flanking Amino Acid:
STINTPRNTTGKKYSWDADT
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
69.5
37.4
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
93.6
0.98
0.6
92.4
17.8
Minor 5ss
34.4
-1.8
3.4
48.7
47
Minor BPS
43.8
-0.6
1.9
49.93
44

Associated Gene:

Gene:
SLC17A5
Ensembl Gene ID:
ENSAPLG00000008535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008916
93191239 - 93212233
20995