About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93209327_93212169_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93209327 - 93212169
Intron Length:
2843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGGA
5'SS Class:
major
3'SS Sequence:
ATTCTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTATTTATTC
Flanking Amino Acid:
LLKEPRLDGAVPACCSARYN
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.1
40.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.9
0.79
0.7
81.8
29.4
Minor 5ss
22.7
-3.1
3.2
19.9
37.9
Minor BPS
55.3
0.15
1.7
67.83
38

Associated Gene:

Gene:
SLC17A5
Ensembl Gene ID:
ENSAPLG00000008535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008916
93191239 - 93212233
20995