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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93228594_93245561_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93228594 - 93245561
Intron Length:
16968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTAG
5'SS Class:
major
3'SS Sequence:
CCTTTTCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCCTTTTCATT
Flanking Amino Acid:
ILSREMVFEKDSFGTLVLPV
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.6
41.6
Major BPS
100
1.24
0.5
100
0
Major PPT
78.4
0.64
0.8
77.7
30
Minor 5ss
34.7
-1.7
3.5
45.4
49.7
Minor BPS
52.8
0.17
1.7
71.97
40.1

Associated Gene:

Gene:
CD109
Ensembl Gene ID:
ENSAPLG00000007918
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008257
93228019 - 93304474
76456