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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93258619_93260820_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93258619 - 93260820
Intron Length:
2202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGGTGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAGAT
U12 Branch Point Sequence:
TGCTGTTTGACT
Flanking Amino Acid:
EEDVSGIVTAKYTYGKPVKG
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
64
0.35
1.3
60.7
45.9
Major PPT
73.2
0.52
1
69.2
46.1
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
59.2
0.37
1.8
75.34
42

Associated Gene:

Gene:
CD109
Ensembl Gene ID:
ENSAPLG00000007918
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008257
93228019 - 93304474
76456