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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93269254_93270019_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93269254 - 93270019
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTTTGTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATGAT
U12 Branch Point Sequence:
TGTGCAATGATT
Flanking Amino Acid:
GESSDITEDSVFHELNLYNT
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
76.5
34
Major BPS
64.5
0.36
1.1
55.4
40.3
Major PPT
82.7
0.74
0.8
77.1
37.1
Minor 5ss
36.8
-1.5
2.9
52.2
44.4
Minor BPS
47.5
-0.1
2
70.09
40.8

Associated Gene:

Gene:
CD109
Ensembl Gene ID:
ENSAPLG00000007918
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008257
93228019 - 93304474
76456