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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93270095_93270537_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93270095 - 93270537
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTTT
5'SS Class:
major
3'SS Sequence:
AAATTTTATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATGTCCTTTATT
Flanking Amino Acid:
LIRGSFGVFQKCSLWVSTDA
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
79
37.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.7
0.49
1
63.2
46.4
Minor 5ss
52.2
0.08
2.8
76.1
39.6
Minor BPS
69.9
0.71
1.6
82.11
39.4

Associated Gene:

Gene:
CD109
Ensembl Gene ID:
ENSAPLG00000007918
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008257
93228019 - 93304474
76456