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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93270599_93271111_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93270599 - 93271111
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGACAT
U12 Branch Point Sequence:
AGGACAATAACT
Flanking Amino Acid:
ILEEDKDHLFYDGMIPIEDG
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
81.8
31
Major BPS
59.8
0.24
1.2
67
39.8
Major PPT
84.4
0.77
0.7
80.5
31.5
Minor 5ss
40
-1.1
2.9
57.3
41.2
Minor BPS
48.3
-0
1.9
66.84
42.8

Associated Gene:

Gene:
CD109
Ensembl Gene ID:
ENSAPLG00000007918
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008257
93228019 - 93304474
76456