About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93272170_93274812_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93272170 - 93274812
Intron Length:
2643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGTAG
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTGTGCTGATCT
Flanking Amino Acid:
GLGVTTAPVELEAFQPFFIF
Intron Amino Acid Position:
734

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
57.7
43.9
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
40.5
-1.1
3.4
55.1
49.1
Minor BPS
51.2
0.12
2.2
76.69
45.7

Associated Gene:

Gene:
CD109
Ensembl Gene ID:
ENSAPLG00000007918
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008257
93228019 - 93304474
76456