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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93277065_93278231_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93277065 - 93278231
Intron Length:
1167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAAACTTTAATT
Flanking Amino Acid:
GSERVQVTAVGDLLGPSING
Intron Amino Acid Position:
893

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
86.3
28.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.2
0.93
0.7
89.2
27.3
Minor 5ss
39.6
-1.2
3.2
55.5
42.8
Minor BPS
71
0.74
1.2
78.91
37.1

Associated Gene:

Gene:
CD109
Ensembl Gene ID:
ENSAPLG00000007918
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008257
93228019 - 93304474
76456