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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93284925_93285445_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93284925 - 93285445
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGGAA
5'SS Class:
major
3'SS Sequence:
TCTTCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCTTCAATG
Flanking Amino Acid:
SSLLGFSDKQHAYVIKSATN
Intron Amino Acid Position:
1056

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
63.8
35.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
87.3
0.84
0.7
85
28.5
Minor 5ss
34.7
-1.7
3.5
46.2
49
Minor BPS
65.2
0.34
1.6
68.76
39.1

Associated Gene:

Gene:
CD109
Ensembl Gene ID:
ENSAPLG00000007918
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008257
93228019 - 93304474
76456