Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93285612_93286642_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

93285612 - 93286642

Intron Length:

1031

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTGCAC

5'SS Class:

major

3'SS Sequence:

GTTTATTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGTTTAT

U12 Branch Point Sequence:

TTTGGTTTATTT

Flanking Amino Acid:

SILNERAEHQGEFRFWITPA

Intron Amino Acid Position:

1111

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

58.5

40.4

Major BPS

63.5

0.34

1.4

57.4

49.1

Major PPT

87.4

0.84

0.8

84.8

35.4

Minor 5ss

37.2

-1.4

3.3

50.1

46.5

Minor BPS

49.9

0.07

2.1

74.81

43.2

Associated Gene:

Gene:

CD109

Ensembl Gene ID:

ENSAPLG00000007918

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008257

93228019 - 93304474

76456