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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93289688_93297006_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93289688 - 93297006
Intron Length:
7319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTCAATTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
CTATATTCAATT
Flanking Amino Acid:
AEGSGFAVFQLNVIYNTKYA
Intron Amino Acid Position:
1249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
74.4
41.9
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
73
0.52
0.9
65.6
39.2
Minor 5ss
47.2
-0.3
2.6
66.5
44.6
Minor BPS
52.5
0.16
1.7
69.83
41.5

Associated Gene:

Gene:
CD109
Ensembl Gene ID:
ENSAPLG00000007918
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008257
93228019 - 93304474
76456