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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_933674_934090_F

Intron Information:

Intron Rank:
132345
Intron Class:
major
Intron Phase:
Intron Coordinates:
933674 - 934090
Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
CATTTTAAATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTCCTTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.9
0.43
1
68.3
41
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
63.5
0.42
1.6
72.26
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021107
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025898
885192 - 934148
48957