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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93388648_93421827_F

Intron Information:

Intron Rank:
128684
Intron Class:
major
Intron Phase:
Intron Coordinates:
93388648 - 93421827
Intron Length:
33180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTAAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
77.3
0.62
1
74.8
39
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
64
0.52
1.7
84.31
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019271
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036399
93387787 - 93424133
36347