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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93487034_93540709_F

Intron Information:

Intron Rank:
134942
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
93487034 - 93540709
Intron Length:
53676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTTG
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTCCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTTCCCAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
69.7
43.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
79.2
0.66
1
79.5
32.8
Minor 5ss
60.6
0.36
2.4
73.2
43.7
Minor BPS
39.8
-0.9
2.2
52.89
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022589
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036823
93486943 - 93542293
55351