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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9359480_9360079_F

Intron Information:

Intron Rank:
150923
Intron Class:
major
Intron Phase:
Intron Coordinates:
9359480 - 9360079
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GTATTTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
73.7
0.53
0.9
72.1
37.5
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
57.5
0.31
1.6
73.73
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031094
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031891
9358293 - 9360545
2253