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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93681733_93683421_F

Intron Information:

Intron Rank:
134739
Intron Class:
major
Intron Phase:
Intron Coordinates:
93681733 - 93683421
Intron Length:
1689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
ATTCCTCATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CATTCCTCATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
65.7
40.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
77.3
0.61
0.9
74.6
34.6
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
52.9
0.07
1.8
63.71
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022466
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047868
93626389 - 93688282
61894
ENSAPLT00000023390
93677778 - 93688282
10505