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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93703478_93703589_R

Intron Information:

Intron Rank:
151758
Intron Class:
major
Intron Phase:
Intron Coordinates:
93703478 - 93703589
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGGACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGTAT
U12 Branch Point Sequence:
CTTTCTTGGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
33.7
Major BPS
62.7
0.32
1.4
63.4
44
Major PPT
69.9
0.45
1
64.5
40.6
Minor 5ss
30.2
-2.3
3.3
39
46.2
Minor BPS
65.9
0.49
1.5
74.8
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029222
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019528
93703067 - 93705772
2706