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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93705996_93706108_R

Intron Information:

Intron Rank:
151756
Intron Class:
major
Intron Phase:
Intron Coordinates:
93705996 - 93706108
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTACTTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83.5
0.75
0.8
77.9
35.6
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
62.1
0.37
1.7
75.57
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029222
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023827
93703067 - 93706731
3665
ENSAPLT00000019410
93703067 - 93707488
4422
ENSAPLT00000036554
93704346 - 93708514
4169