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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93705996_93708426_R

Intron Information:

Intron Rank:
151761
Intron Class:
major
Intron Phase:
Intron Coordinates:
93705996 - 93708426
Intron Length:
2431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
ATATTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTACTTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83.5
0.75
0.8
77.9
35.6
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
62.1
0.37
1.7
75.57
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029222
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023602
93705243 - 93709021
3779