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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93708515_93708835_R

Intron Information:

Intron Rank:
151762
Intron Class:
major
Intron Phase:
Intron Coordinates:
93708515 - 93708835
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAAAA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAACTTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
71.5
33.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
38.9
-1.2
2.8
48.9
46.9
Minor BPS
54
0.12
1.3
58.52
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029222
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023602
93705243 - 93709021
3779