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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93717123_93720024_R

Intron Information:

Intron Rank:
129039
Intron Class:
major
Intron Phase:
Intron Coordinates:
93717123 - 93720024
Intron Length:
2902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTTACTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
72.1
40.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
78.8
0.65
0.8
73.4
30.1
Minor 5ss
38.9
-1.2
2.9
49.7
46.6
Minor BPS
76.4
0.82
1.2
79.82
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016562
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030788
93716761 - 93759494
42734
ENSAPLT00000021357
93716761 - 93749328
32568