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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93720150_93748971_R

Intron Information:

Intron Rank:
129040
Intron Class:
major
Intron Phase:
Intron Coordinates:
93720150 - 93748971
Intron Length:
28822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TAGACATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
85.5
0.8
0.7
77
31.7
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
62.1
0.46
1.6
75.44
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016562
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030788
93716761 - 93759494
42734
ENSAPLT00000021357
93716761 - 93749328
32568