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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93745016_93748971_R

Intron Information:

Intron Rank:
129044
Intron Class:
major
Intron Phase:
Intron Coordinates:
93745016 - 93748971
Intron Length:
3956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTTTGTATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
73.7
0.53
0.8
66.8
39.7
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
45.8
-0.2
2.2
69.14
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016562
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044289
93744752 - 93749328
4577