About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93749075_93759411_R

Intron Information:

Intron Rank:
129043
Intron Class:
major
Intron Phase:
Intron Coordinates:
93749075 - 93759411
Intron Length:
10337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CATCTTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATCTTATTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.5
0.57
0.8
70.3
34.6
Minor 5ss
34
-1.8
3.3
40.9
45.4
Minor BPS
53.3
-0
1.7
59.12
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016562
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030788
93716761 - 93759494
42734