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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93812374_93814329_R

Intron Information:

Intron Rank:
137975
Intron Class:
major
Intron Phase:
Intron Coordinates:
93812374 - 93814329
Intron Length:
1956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
GGTTAATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.2
28.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
71
0.47
1
66.9
43.8
Minor 5ss
35.2
-1.7
2.8
40.3
40.2
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021756
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028498
93812088 - 93815953
3866