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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93815696_93815774_R

Intron Information:

Intron Rank:
137977
Intron Class:
major
Intron Phase:
Intron Coordinates:
93815696 - 93815774
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTACTGTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTTTTCAGATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
77.7
0.62
0.9
68.7
41.8
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
44.6
-0.3
2
66.73
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021756
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028498
93812088 - 93815953
3866