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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93871263_93872337_R

Intron Information:

Intron Rank:
59
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
93871263 - 93872337
Intron Length:
1075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTAAAATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AATTCTAAAATT
Flanking Amino Acid:
QGPRGLPGPPGPQGESRTGP
Intron Amino Acid Position:
2960

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
59.6
0.22
1
58.5
40.6
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
51
0.11
1.9
72.28
38.9

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577