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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93873629_93874759_R

Intron Information:

Intron Rank:
57
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93873629 - 93874759
Intron Length:
1131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATGGT
5'SS Class:
major
3'SS Sequence:
CTTTCATTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
ARQVCEQLINGQMSRFNQML
Intron Amino Acid Position:
2874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
71.2
38.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.9
0.58
1
79.7
31.5
Minor 5ss
33.9
-1.8
3.4
46.4
44.2
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577