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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93884620_93886268_R

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93884620 - 93886268
Intron Length:
1649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGAAAC
5'SS Class:
major
3'SS Sequence:
ACTTGCCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
TTTGCAGTTACA
Flanking Amino Acid:
VGPPGPPGPANLVLIFFFKG
Intron Amino Acid Position:
2751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
68.4
36.5
Major BPS
66.3
0.41
1
61
37.5
Major PPT
67
0.38
0.9
63.6
37.9
Minor 5ss
36.7
-1.5
3.1
53.9
43.1
Minor BPS
45.3
-0.3
2.5
68.43
43.6

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577