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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93886356_93886978_R

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93886356 - 93886978
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCGTA
5'SS Class:
strong_major
3'SS Sequence:
ATTGAATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TGTGATTGAATT
Flanking Amino Acid:
RDRCCDLPSMRDEAKCPALP
Intron Amino Acid Position:
2722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.2
36.5
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
75.6
0.58
1
70.8
43.7
Minor 5ss
40.1
-1.1
3.4
52.2
46
Minor BPS
50.5
0.09
1.7
70.4
40.8

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577