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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93887057_93888253_R

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93887057 - 93888253
Intron Length:
1197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCAAT
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
CTTTCTTTTACA
Flanking Amino Acid:
LMKGDRRSATLEIQNFDIVC
Intron Amino Acid Position:
2696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
72
39.5
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
91.9
0.94
0.6
87.1
23.5
Minor 5ss
43.2
-0.7
3
63.3
42
Minor BPS
70.8
0.65
1.6
78.96
37.6

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577