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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93897128_93898016_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93897128 - 93898016
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGAACTTAAAT
Flanking Amino Acid:
VTFVCETATSTCPLIYLEGY
Intron Amino Acid Position:
2502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.9
33.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
82.1
0.72
0.7
80.7
24.6
Minor 5ss
31.4
-2.1
2.7
33.6
35.4
Minor BPS
63.2
0.49
1.7
79.5
41.8

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577