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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93901661_93902196_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93901661 - 93902196
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTGGTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TAAGTTTCAATT
Flanking Amino Acid:
PPPTIPPARDVCRGAKADIV
Intron Amino Acid Position:
2311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
72.4
38.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
80.7
0.69
0.9
76.9
37.3
Minor 5ss
44
-0.6
2.8
55.2
44.3
Minor BPS
50
0.08
1.6
65.42
39.7

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577