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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93902877_93903319_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93902877 - 93903319
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATACA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
SYRLKLYPADGSRGQEITVR
Intron Amino Acid Position:
2237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
75.7
33.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
35.5
-1.6
2.7
40.3
40.5
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577