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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93905181_93905371_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93905181 - 93905371
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTTAT
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTCTAATTAATG
Flanking Amino Acid:
GGQLTGNGRTVGLLPPQNMY
Intron Amino Acid Position:
2109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
78.6
31
Major BPS
83
0.82
0.8
82
24.9
Major PPT
89.2
0.88
0.6
88.7
20.6
Minor 5ss
42.1
-0.9
2.9
55.1
44.4
Minor BPS
51.1
-0.1
1.9
58.4
43.1

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577