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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93905502_93907140_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93905502 - 93907140
Intron Length:
1639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTATATGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATAT
Flanking Amino Acid:
PTVGDPIDEYTTVPGIRNNV
Intron Amino Acid Position:
2066

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
28.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.2
0.54
1
66.2
44.7
Minor 5ss
45.3
-0.5
2.8
64.3
39.9
Minor BPS
56.4
0.28
1.7
77.34
39.2

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577