Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93907284_93907946_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

93907284 - 93907946

Intron Length:

663

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGAGGC

5'SS Class:

major

3'SS Sequence:

GTTTTTTCTCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTTAT

U12 Branch Point Sequence:

GTGTACTTATGC

Flanking Amino Acid:

GNPSQAQGRTLPRSGPRNVR

Intron Amino Acid Position:

2018

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

1.1

66.3

Major BPS

83.6

0.84

0.8

71.9

35.8

Major PPT

84.6

0.78

0.7

77.9

36.6

Minor 5ss

33.2

-1.9

3.5

46.3

42.4

Minor BPS

47.7

-0.1

2.1

59.97

44.9

Associated Gene:

Gene:

COL12A1

Ensembl Gene ID:

ENSAPLG00000012959

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013741

93868544 - 93956120

87577