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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93911288_93912174_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93911288 - 93912174
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGAAAC
5'SS Class:
major
3'SS Sequence:
TGATCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
AGCTCATTGATC
Flanking Amino Acid:
GGRMTGRGRTKPLTTVKNVL
Intron Amino Acid Position:
1837

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
69.2
35.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
76.5
0.6
1
73.2
41.8
Minor 5ss
36
-1.6
3
49.6
40.5
Minor BPS
55
0.14
1.6
61.8
37.6

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577