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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93912305_93915174_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93912305 - 93915174
Intron Length:
2870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAACTAAT
5'SS Class:
major
3'SS Sequence:
TGTTTTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTGTTTTACT
Flanking Amino Acid:
PISGDGPEQSTMVGGRQNSV
Intron Amino Acid Position:
1794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
78.3
37.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83.7
0.76
0.8
78.5
34.7
Minor 5ss
43.4
-0.7
2.7
60.7
43.8
Minor BPS
63.9
0.52
2.1
87.77
37.8

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577