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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93915895_93915999_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93915895 - 93915999
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCACAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATTT
Flanking Amino Acid:
GPYGRSEKQETILNGDDNSL
Intron Amino Acid Position:
1693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
63.3
0.3
1
62.3
33.6
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
57.4
0.31
1.8
77.92
38.5

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577