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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93918401_93919206_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93918401 - 93919206
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTACA
5'SS Class:
major
3'SS Sequence:
CATTATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTGTCATTATTT
Flanking Amino Acid:
SDPLTSQEVTLPLPGPRGLT
Intron Amino Acid Position:
1559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
75.4
33.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.6
0.73
0.9
76.1
37.3
Minor 5ss
44.5
-0.6
2.5
56.5
41
Minor BPS
54.5
0.22
1.9
72.68
44.6

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577