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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93920970_93921924_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93920970 - 93921924
Intron Length:
955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATG
Flanking Amino Acid:
YPATGGPPQQFYVSRMETTT
Intron Amino Acid Position:
1424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.6
30.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.9
0.67
0.8
77
30.6
Minor 5ss
34.7
-1.7
2.6
44.5
42.8
Minor BPS
61.5
0.22
1.7
66.67
41.7

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577