Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93923165_93923766_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

93923165 - 93923766

Intron Length:

602

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTCAC

5'SS Class:

strong_major

3'SS Sequence:

TGTATCATGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

CTCTTTGTATCA

Flanking Amino Acid:

LPYKGGNTLTGMALDFILKN

Intron Amino Acid Position:

1273

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

36.6

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

62.7

0.29

1.1

55.9

44.4

Minor 5ss

40.6

-1

2.8

52.4

44.8

Minor BPS

45.1

-0.3

2.2

57.41

43.2

Associated Gene:

Gene:

COL12A1

Ensembl Gene ID:

ENSAPLG00000012959

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013741

93868544 - 93956120

87577