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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93923887_93923969_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93923887 - 93923969
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGGCTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TACATAATAACT
Flanking Amino Acid:
FDIGPDKVQIGLAQYSGDPR
Intron Amino Acid Position:
1233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
34.9
Major BPS
80
0.75
1
78.6
31
Major PPT
81
0.7
0.9
72.8
42.2
Minor 5ss
42.1
-0.9
2.9
55.5
43.9
Minor BPS
48.1
-0
1.9
68.01
42.1

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577