Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93924120_93926797_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

93924120 - 93926797

Intron Length:

2678

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAACATG

5'SS Class:

strong_major

3'SS Sequence:

GTTGACATGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTATCAT

U12 Branch Point Sequence:

TTCTGGTTGACA

Flanking Amino Acid:

DTTTEPFLSRGLECRTRAEA

Intron Amino Acid Position:

1183

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

75.1

41.1

Major BPS

70.5

0.51

1.3

41.2

Major PPT

61.6

0.26

1.1

55.4

44.3

Minor 5ss

42.3

-0.8

56.9

47.4

Minor BPS

49.3

-0

2.5

69.92

42.9

Associated Gene:

Gene:

COL12A1

Ensembl Gene ID:

ENSAPLG00000012959

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013741

93868544 - 93956120

87577