About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93926920_93927608_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93926920 - 93927608
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGATA
5'SS Class:
strong_major
3'SS Sequence:
TTAACTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
GTTTATTTAACT
Flanking Amino Acid:
YDSTVVLEELRAGTTYKVNV
Intron Amino Acid Position:
1142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
80.5
33.7
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
76.8
0.6
0.9
70.5
39.5
Minor 5ss
41.9
-0.9
3.1
56.7
47.6
Minor BPS
76.9
0.92
1.4
89.9
33.7

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577